Javascript Tree Menu

TIGR Plant Transcript Assembly BLAST Server

Select the plant transcript assembly databases you would like to search:

Note: Checking a node will automatically select all the children. Searches may take a long time to complete when searching many databases.

Select a BLAST program:

Program:
Alignments:

Upload a file containing a sequence OR paste it into the textbox:


(Note: If both are entered, the file will be ignored.)
Enter the name of the file containing a sequence in FASTA or raw format:
Enter your sequence in FASTA or raw format:
Sequence identifier (for definition line if raw sequence entered):


Options:

Matrix: Filter: Expect:
Cutoff: Strand: Descriptions:
Wordlength (for blastn only):   Echofilter
Graphical Overview Ignore Hypotheticals


The email option allows the user to be notified by email when the blast search is completed. The email will contain a link to the results. Use this option when running a lengthy search. To activate this option, check the box to the left and fill in an email address in the box to the right.
Send a link to results to email address:


This server runs WU-BLAST 2.0. [Disclaimer]

Report problems using the TIGR Plant TA BLAST server to: plantgenomics@tigr.org