Home    Site Map  Download      FAQ         Links       Genome Browser  
TIGR Plant Repeat Database - Web BLAST Server

This server runs WU-BLAST 2.0. [Disclaimer]
Select a program and database to search against:

Database: Alignments:
Upload a file containing a sequence OR paste it into the textbox:
(Note: If both are entered, the file will be ignored.)
Enter the name of the file containing a sequence in FASTA or raw format:
Enter your sequence in FASTA or raw format:
Sequence identifier (for definition line if raw sequence entered):

Matrix: Filter: Expect:
Cutoff: Strand: Descriptions:
Wordlength (for blastn only): Echofilter Ignore Hypotheticals
Graphical Overview Map Overview PID (map overview only)

The email option allows the user to be notified by email when the blast search is completed. The email will contain a link to the results. Use this option when running a lengthy search. To activate this option, check the box to the left and fill in an email address in the box to the right.
Send a link to results to email address:

For Rice Comments/Questions send mail to the TIGR rice team.
Photographs courtesy of Robin Buell (TIGR), Jiming Jiang (University of Wisconsin), and the USDA Agricultural Research Service