The TIGR Rice Genome Project BLAST server has a collection of databases for use in searching with the BLAST programs blastn,
blastx, tblastn, or tblastx. There are a total of 24 databases to search. You can find a detailed explanation of the
The TIGR Rice Pseudomolecules database allows users to search against the latest version of the 12 TIGR rice pseudomolecules. There are three additional databases for searching the Release 4 pseudomolecules: Genes in TIGR Rice Pseudomolecules:Genomic sequences, Genes in TIGR Rice Pseudomolecules:CDSs, and Genes in TIGR Rice Pseudomolecules:Protein sequences.
Databases also available include Rice, Barley, Maize, Rye, Sorghum, Sugarcane, and Wheat TIGR Gene Indices, TIGR Maize Assemblies(5.0), TIGR Sorghum MF Assemblies, KOME Full Length CDNAs, all Rice BAC and PAC sequences in Genbank, TIGR Oryza Repeat Database, TIGR Gramineae Reapeat Database, Rice Marker Sequences, Rice BAC end sequences, Flanking Sequence Tags,
and three databases from the TAIR Arabidopsis Annotation Release 6.
The annotated sequences include both experimentally characterized genes
and those based on gene predictions. Click
here for information regarding the annotation of rice genes at
This server runs WU-BLAST 2.0. [Disclaimer]